"Hmmalign" Example Sentences
1. I need to hmmalign these protein sequences to see if they have any homology.
2. Did you remember to hmmalign the new sequences before running the phylogenetic analysis?
3. The accuracy of the hmmalign algorithm depends on the quality of the input data.
4. I'm not sure how to interpret the results from hmmalign, can you help me?
5. The hmmalign program is efficient and can handle a large amount of data.
6. Can you show me how to run hmmalign on the command line?
7. Hmmalign is a popular tool used in bioinformatics to align protein sequences.
8. I think the problem with this alignment is related to the parameters used in hmmalign.
9. After using hmmalign, we can clearly see the position of conserved residues.
10. Hmmalign is one of the most accurate tools for aligning protein sequences.
11. I prefer using hmmalign over other alignment algorithms because of its flexibility.
12. There are some limitations to using hmmalign, such as the time it takes to process large datasets.
13. Do you have experience using other programs that are similar to hmmalign?
14. The output from hmmalign can be used to generate a phylogenetic tree.
15. Hmmalign is based on a probabilistic model and can provide confidence scores for each alignment.
16. I'm not getting the results I expected from hmmalign, what could be the problem?
17. Although hmmalign is a powerful tool, it is not suitable for all types of sequence data.
18. We used hmmalign to align the protein sequences and then used that alignment to build a 3D structure.
19. Hmmalign is widely used in bioinformatics because of its accuracy and speed.
20. The output from hmmalign can be customized to include only the regions of interest.
21. I'm having trouble interpreting the E-values calculated by hmmalign, can you explain them to me?
22. The hmmalign program is constantly being updated and improved to increase its accuracy.
23. One of the advantages of hmmalign is that it can handle gaps and insertions in the sequence.
24. Can hmmalign be used to align DNA sequences as well as protein sequences?
25. I ran hmmalign on the new data and it seems to be a good fit with the previous results.
26. Hmmalign can be used to identify and align functional domains within a protein sequence.
27. In our study, we compared the results of hmmalign with other alignment algorithms to determine which was the most accurate.
28. The strength of hmmalign lies in its ability to accurately align divergent protein sequences.
29. Can you recommend a good tutorial for learning how to use hmmalign?
30. Our research group is currently developing new methods to improve the performance of hmmalign.
Common Phases
1. "Input file not specified; please provide input file name."
2. "Output file not specified; please provide output file name."
3. "Gap open penalty not specified; defaulting to 8.0."
4. "Gap extension penalty not specified; defaulting to 0.8."
5. "Alignment not found; please check input sequences."
6. "Alignment complete; outputting results to specified file."
7. "Invalid input format; please provide a valid HMM file."
8. "Input sequences must be of equal length."
9. "Alignment score: 65.2 (max possible: 100.0)".
10. "Alignment successful; 4 sequences aligned."